Lesson Material
Most of this material originated with a grassroots group at the University of Wisconsin - Madison called The Hacker Within and has been modified by Software Carpentry instructors over multiple bootcamps.
Day 1
bash (gitbash on windows),
git, and python to participate, and enough connectivity to
syncrhonize the instrucitonal materials on github. If you can run git clone
https://github.com/wltrimbl/2014-05-12-cshl, your git is working. If you
can launch ipython notebook from the command line your python is probably
working, too.- Python variables
-
To open ipython notebooks, create a new Terminal (gitbash for windows) tab and invoke (for instance)
ipython notebookThis command should open the first lesson in a browser:ipython notebook 2014-05-12-cshl/materials/03-python-variables/variables.ipynb - Python data structures
-
2014-05-12-cshl/materials/04-python-datastructures/data-structures.ipynb.
Day 2
- Version Control Local
- Please open a terminal and follow along on the tutorial page tutorial page.
- Version Control Remote
- Please open a terminal, sign into GitHub, and follow along on the tutorial page tutorial page.
- Shell part two: automation. Please open a terminal and follow along on the Shell automation tutorial.
- Python flow control
-
2014-05-12-cshl/materials/06-python-flowcontrol/python_flow_control.ipynb. - Python funcitons and modules
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2014-05-12-cshl/materials/05-python-functions/python_functions_and_modules.ipynb. - Intro R
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To open this lesson, first start Rstudio, then open
2014-05-12-cshl/materials/11-introR/short/cummerBund_demo.Rmd
and
2014-05-12-cshl/materials/11-introR/short/intro_exploring_human_genome.Rmd